Package | Description |
---|---|
org.simmetrics.metrics | |
org.simmetrics.metrics.functions |
Constructor and Description |
---|
SmithWaterman(Gap gap,
Substitution substitution,
int windowSize)
Constructs a new Smith Waterman metric.
|
Modifier and Type | Class and Description |
---|---|
class |
AffineGap
A gap function that calculates the gap penalty as
A+(B * GapLegth) . |
class |
ConstantGap
A gap function that assigns a constant penalty to a gap regardless of size.
|
class |
LinearGap
A gap function that takes into account the length the gap.
|
Copyright © 2014–2018. All rights reserved.