Interface | Description |
---|---|
Gap |
A gap function assigns penalty to the creation of a gap in a string when
matching against another string.
|
Substitution |
A substitution function assigns value to the substitution of one character
for another matching against another string.
|
Class | Description |
---|---|
AffineGap |
A gap function that calculates the gap penalty as
A+(B * GapLegth) . |
ConstantGap |
A gap function that assigns a constant penalty to a gap regardless of size.
|
LinearGap |
A gap function that takes into account the length the gap.
|
MatchMismatch |
A substitution function that assigns one value to equal characters, another
value to unequal characters.
|
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